![]() ![]() Local: oea 4 GB 1 CPU x 8 jobs 32 GB 8 CPUs (overlap error adjustment) Local: red 4 GB 4 CPUs x 2 jobs 8 GB 8 CPUs (read error detection) Local: ovs 8 GB 1 CPU x 4 jobs 32 GB 4 CPUs (overlap store sorting) Local: ovb 4 GB 1 CPU x 8 jobs 32 GB 8 CPUs (overlap store bucketizer) Local: utgovl 4 GB 8 CPUs x 1 job 4 GB 8 CPUs (overlap detection) Local: obtovl 4 GB 8 CPUs x 1 job 4 GB 8 CPUs (overlap detection) Local: cormhap 6 GB 8 CPUs x 1 job 6 GB 8 CPUs (overlap detection with mhap) ![]() Local: meryl 8 GB 4 CPUs x 1 job 8 GB 4 CPUs (k-mer counting) No grid engine detected, grid disabled. Detected 8 CPUs and 32 gigabytes of memory. Detected gnuplot version '5.2 patchlevel 2' (from 'gnuplot') and image format 'png'. Detected Java(TM) Runtime Environment '9.0.4' (from 'java'). Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Contig consensus sequences are generated using an algorithm derived from pbdagcon: Phased diploid genome assembly with single-molecule real-time sequencing. ![]() Corrected read consensus sequences are generated using an algorithm derived from FALCON-sense: ![]() Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences. Assembling large genomes with single-molecule sequencing and locality-sensitive hashing. Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance. Read and contig alignments during correction, consensus and GFA building use: Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Koren S, Walenz BP, Berlin K, Miller JR, Phillippy AM. > -nanopore-corrected /Users/minion/Desktop/AoC\ MinION\ Seq/Porechop\ Files/BC01.fastq p 300OR1 -d /Users/minion/Desktop/AoC\ MinION\ Seq/Porechop\ Files/Canu\ Output \ ![]()
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